hanna 8a1207e4db Bringing up scaffolding for integration of locus traversals by reference with Aaron's data source code. ... Reverts to original TraverseByLociByReference behavior unless a special combination of command-line flags are used. Lightly tested at best, and major flaws include: - MicroManager is not doing MicroScheduling right now; it's driving the traversals. - New database-ish data providers imply by their interface that they're stateless, but they're highly stateful. - Using static objects to circumvent encapsulation. - Code duplication is rampant. - Plus more! git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@346 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-09 20:28:17 +00:00
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src/org/broadinstitute/sting	Bringing up scaffolding for integration of locus traversals by reference with Aaron's data source code.	2009-04-09 20:28:17 +00:00
test/org/broadinstitute/sting	Some cleanup to the data source, and another JUnit test case.	2009-04-09 14:58:05 +00:00