gatk3的最后一个经典版本3.8
 
 
 
 
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hanna 8a1207e4db Bringing up scaffolding for integration of locus traversals by reference with Aaron's data source code.
Reverts to original TraverseByLociByReference behavior unless a special combination of command-line flags are used.

Lightly tested at best, and major flaws include:
- MicroManager is not doing MicroScheduling right now; it's driving the traversals.
- New database-ish data providers imply by their interface that they're stateless, but they're highly stateful.
- Using static objects to circumvent encapsulation.
- Code duplication is rampant.
- Plus more!


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@346 348d0f76-0448-11de-a6fe-93d51630548a
2009-04-09 20:28:17 +00:00
c Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
doc Updated with last week / next week for 6 April. 2009-04-06 14:05:20 +00:00
java Bringing up scaffolding for integration of locus traversals by reference with Aaron's data source code. 2009-04-09 20:28:17 +00:00
python Helper utility for merging BAM files 2009-04-09 20:10:41 +00:00
settings Bump sam jdk to svn rev 207. 2009-04-08 22:16:46 +00:00
shell Move non-java code out of playground. 2009-03-23 19:31:38 +00:00
testdata Skeleton of new directory structure. 2009-03-11 20:05:05 +00:00
build.xml Bump sam jdk to svn rev 207. 2009-04-08 22:16:46 +00:00
ivy.xml Added castor dependency. 2009-04-07 22:27:39 +00:00