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carneiro 96628457cb pacbio calling pipeline also using VQSR2 now, minor updates on the other pipelines to get the papuans through. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5479 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-03-18 22:06:52 +00:00
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dataProcessing.scala pacbio calling pipeline also using VQSR2 now, minor updates on the other pipelines to get the papuans through. 2011-03-18 22:06:52 +00:00
dataProcessingV2.scala now merging bam files per sample and processing according to cleaning options. 2011-03-18 21:31:29 +00:00
justClean.scala pacbio calling pipeline also using VQSR2 now, minor updates on the other pipelines to get the papuans through. 2011-03-18 22:06:52 +00:00
pbCalling.scala pacbio calling pipeline also using VQSR2 now, minor updates on the other pipelines to get the papuans through. 2011-03-18 22:06:52 +00:00