gatk3的最后一个经典版本3.8

Ryan Poplin 89e2943dd1 The maximum kmer length is derived from the reads. ... -- This is done to take advantage of longer reads which can produce less ambiguous haplotypes -- Integration tests change for HC and BiasedDownsampling		2013-02-25 14:40:25 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	The maximum kmer length is derived from the reads.	2013-02-25 14:40:25 -05:00
public	The maximum kmer length is derived from the reads.	2013-02-25 14:40:25 -05:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00