Khalid Shakir 89a581a66f Added ability to specify arguments in files via -args/--arg_file ... Pushing back downsample and read filter args so they show up in getApproximateCommandLineArgs()		2011-10-24 15:58:34 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00