carneiro 897a333aba Methods Development Pipeline now has the option of calling indels with the -indels parameter. Also updated some databases and the new NA12878 HiSeq hg19 that Tim just funneled to us, is updated and called. ... Small fixes on the data processing pipeline git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5304 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-24 17:12:55 +00:00
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dataProcessing.scala	Methods Development Pipeline now has the option of calling indels with the -indels parameter. Also updated some databases and the new NA12878 HiSeq hg19 that Tim just funneled to us, is updated and called.	2011-02-24 17:12:55 +00:00
pbCalling.scala	Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done.	2011-02-16 17:22:30 +00:00