gatk-3.8/scala
carneiro 897a333aba Methods Development Pipeline now has the option of calling indels with the -indels parameter. Also updated some databases and the new NA12878 HiSeq hg19 that Tim just funneled to us, is updated and called.
Small fixes on the data processing pipeline


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5304 348d0f76-0448-11de-a6fe-93d51630548a
2011-02-24 17:12:55 +00:00
..
qscript Methods Development Pipeline now has the option of calling indels with the -indels parameter. Also updated some databases and the new NA12878 HiSeq hg19 that Tim just funneled to us, is updated and called. 2011-02-24 17:12:55 +00:00
src/org/broadinstitute/sting Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit. 2011-02-23 18:59:08 +00:00
test/org/broadinstitute/sting/queue Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit. 2011-02-23 18:59:08 +00:00