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Mark DePristo 8971b54b21 Phase II of Stratification manager 
-- Renamed and reorganized infrastructure
-- StratificationManager now a Map from List<Object> -> V.  All key functions are implemented.  Less commonly used TODO
-- Ready for hookup to VE
 		2012-03-30 15:31:54 -04:00
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R Further cleanup of R 2012-03-22 21:24:37 -04:00
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
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doc
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java Phase II of Stratification manager 2012-03-30 15:31:54 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
perl Update to the bindings for liftOverVCF.pl (to -V from -B) 2011-09-15 15:33:09 -04:00
scala Added more primitives to GATK Report Column Type 2012-03-28 09:07:54 -04:00
testdata BQSR Gatherer implementation and integration tests 2012-03-27 13:50:22 -05:00