hanna 648a36d08e Temporary solution: add the commons logging implementation to the VariantFiltration package. Downstream solution is described in GSA-262. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2665 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-23 01:46:18 +00:00
..
Aligner.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
AnalyzeCovariates.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
CreatePackager.xsl	More cleanup. Make sure resources are unioned among all the specified modules.	2010-01-21 19:38:46 +00:00
FindContaminatingReadGroups.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
FixBAMSortOrder.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
GATK-GSA-Pipeline.xml	Cleanup of GATK-GSA-Pipeline to support the new naming.	2010-01-21 22:17:35 +00:00
GATK-Picard.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
GATKResources.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
GenomeAnalysisTK.xml	More cleanup. Make sure resources are unioned among all the specified modules.	2010-01-21 19:38:46 +00:00
LocalRealignmentAroundIndels.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
PicardPrivate.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
QualityScoresRecalibration.xml	A few more bug fixes based on extended testing. Sorry, Eric.	2010-01-21 22:12:16 +00:00
UnifiedGenotyper.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
VCFValidator.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
VariantAnnotator.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
VariantEval.xml	Cleanup and formatting overhaul.	2010-01-21 19:22:56 +00:00
VariantFiltration.xml	Temporary solution: add the commons logging implementation to the VariantFiltration package. Downstream solution is described in GSA-262.	2010-01-23 01:46:18 +00:00