asivache 893f1b6427 updated ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@800 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-22 17:25:50 +00:00
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gatk	Auxiliary class that can read one line from samtools pileup file. Used by rodSAMPileup to read pairs of lines as needed. NOTE: this class implements Genotype and (a trivial) GenotypeList, but it is NOT a rod!	2009-05-22 17:20:01 +00:00
playground	updated	2009-05-22 17:25:50 +00:00
secondarybase	Refreshes the mount points that we'll be using (so that the program will play nicely with LSF).	2009-05-21 20:36:12 +00:00
utils	Intermediate checking for evaluation -- now supports transition / transversion evaluation	2009-05-22 17:05:06 +00:00