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gatk3的最后一个经典版本3.8
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257 MiB
Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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corin 8931a63588 updated a whole bunch of column names to work like i want them to and added more informative figures for DOC 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4131 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-08-26 18:19:09 +00:00
R updated a whole bunch of column names to work like i want them to and added more informative figures for DOC 2010-08-26 18:19:09 +00:00
archive Archiving 2010-07-27 02:47:18 +00:00
c Reduce file handle usage. 2010-01-05 18:03:01 +00:00
doc removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
java A java reimplementation of vcf2table in python; supports getting more useful information about genotypes (HET, e.g.) than was possible in python. 2010-08-26 17:50:33 +00:00
matlab Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function 2009-11-30 20:02:25 +00:00
packages Enabling support for any scala used in QScripts. 2010-08-17 22:05:56 +00:00
perl update to use new rod syntax 2010-08-25 20:21:53 +00:00
python updated to deal with new cleaning pipeline outputs and potentially infinity TI/TV 2010-08-24 16:01:09 +00:00
ruby accidentally commited an old tool 2010-08-25 15:42:02 +00:00
scala Updated Queue GATK generation to reflect -B and -I changes. 2010-08-25 22:17:36 +00:00
settings removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
shell Useful script to see the status of gsa computing resources. Crontab'd and will be arriving as email at 8 am 2010-08-07 12:36:28 +00:00
testdata and add changes to the vcf used in testing 2010-06-25 02:56:02 +00:00
LICENSE Adding a license to the root directory in case BOSC checks for one. Has the 2010-04-20 16:04:29 +00:00
build.xml removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
ivy.xml Okay, finally done with VCF compression. Now: 2010-08-24 16:36:54 +00:00