chartl 88d0890cc3 Made PooledGenotypeConcordance a standard test in VariantEval ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1759 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-02 20:03:31 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Made PooledGenotypeConcordance a standard test in VariantEval	2009-10-02 20:03:31 +00:00
test/org/broadinstitute/sting	A big fix for MergingSamRecordIterator, where we weren't correctly handling the comparisons of SAMRecords correctly (we weren't applying the new reference index first, so sometimes the MT contig would be ID 23, sometimes 24 in different records).	2009-10-02 19:35:35 +00:00