zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/PairHMM_JNI
History
Karthik Gururaj 88c08e78e7 1. Inserted #define in sandbox pairhmm-template-main.cc 
2. Wrapped _mm_empty() with ifdef SIMD_TYPE_SSE
3. OpenMP disabled
4. Added code for initializing PairHMM's data inside initializePairHMM -
not used yet
 		2014-01-21 09:57:14 -08:00
..
.gitignore 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
JNI_README Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
Makefile Fixed bug in JNI interface release_array 2014-01-20 11:07:44 -08:00
avx_function_instantiations.cc 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
baseline.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
define-double.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
define-float.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
define-sse-double.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
define-sse-float.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
headers.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
libJNILoglessPairHMM.so 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc Fixed bug in JNI interface release_array 2014-01-20 11:07:44 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
pairhmm-1-base.cc 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
pairhmm-template-kernel.cc 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
pairhmm-template-main.cc 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
run.sh 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
shift_template.c 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
sse_function_instantiations.cc 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
template.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
utils.cc 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
utils.h 1. Integrated Mohammad's SSE4.2 code, Mustafa's bug fix and code to fix the 2014-01-20 08:03:42 -08:00
vector_defs.h 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00
vector_function_prototypes.h 1. Inserted #define in sandbox pairhmm-template-main.cc 2014-01-21 09:57:14 -08:00