Mauricio Carneiro 88a02fa2cb Fixing but for reads with cigars like 9S54H ... When hard-clipping predict when the read is going to be fully hard clipped to the point where only soft/hard-clips are left in the read and preemptively eliminate the read before the SAMRecord mathematics on malformed cigars kills the GATK.		2012-07-02 16:22:00 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fixing but for reads with cigars like 9S54H	2012-07-02 16:22:00 -04:00
test	Disabling bcf2 reading from samtools because it's 1 basis; updating select variants integrationtest	2012-07-02 15:55:42 -04:00