gatk3的最后一个经典版本3.8

David Roazen 884d031e72 NestedIntegerArray: Pre-allocate only the first two dimensions ... It turns out that pre-allocating the entire tree was too expensive in terms of memory when using large values for the -mcs and -ics parameters. Pre-allocating the first two dimensions prevents us from ever locking the root node during a put(). Contention between threads over lower levels of the tree should be minimal given that puts are rare compared to gets. Also output dimensions and pre-allocation info at startup. If pre-allocation takes longer than usual this gives the user a sense of what is causing the delay.		2012-10-25 15:17:42 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Committing a broken version of BaseRecalibration	2012-10-25 14:46:35 -04:00
public	NestedIntegerArray: Pre-allocate only the first two dimensions	2012-10-25 15:17:42 -04:00
settings	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updated google reflections due to stale slf4j version conflicting with other projects also trying to use Queue as a component.	2012-10-16 02:22:30 -04:00