Eric Banks 881b2b50ab Optimized counting of filtered records by filter. ... Don't map class to counts in the ReadMetrics (necessitating 2 HashMap lookups for every increment). Instead, wrap the ReadFilters with a counting version and then set those counts only when updating global metrics.		2013-05-21 21:54:49 -04:00
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net/sf/samtools	Delete unused FastaSequenceIndexBuilder class and accompanying test	2013-05-01 01:02:01 -04:00
org/broadinstitute/sting	Optimized counting of filtered records by filter.	2013-05-21 21:54:49 -04:00