bradtaylor 86fe9fae76 Changes to Array PairHMM to address review comments ... Returned Logless Caching implementation to the default in all cases. Changing to the array version will await performance benchmarking Refactored many pieces of functionality in ArrayLoglessPairHMM into their own methods.		2013-08-28 17:23:29 -04:00
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java	Changes to Array PairHMM to address review comments	2013-08-28 17:23:29 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00