gatk3的最后一个经典版本3.8

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bradtaylor 86fe9fae76 Changes to Array PairHMM to address review comments Returned Logless Caching implementation to the default in all cases. Changing to the array version will await performance benchmarking Refactored many pieces of functionality in ArrayLoglessPairHMM into their own methods.		2013-08-28 17:23:29 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Changes to Array PairHMM to address review comments	2013-08-28 17:23:29 -04:00
public	Add Array Logless PairHMM	2013-08-28 17:21:23 -04:00
settings	- update picard, sam, variants and tribble after fixing bug in BCF2Utils.makeDictionary as reported in ticket 52571227	2013-08-21 12:06:42 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	build.xml: make ant -p output only important build targets	2013-07-19 14:35:00 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit