gatk-3.8/public
Christopher Hartl 86890c6357 N and K (in binomial probability) got switched in RFA Walker with the last commit. No longer will NaNs be produced.
Added: TableToVCF. Kind of a longer-term project, but there are lots of variant calls available in a weird tabular format. I used this to convert Ju Et Al small indels to VCF. I'll check against the 1000G ASN superpopulation calls to see if we see a good amount of recapitulation, and if so, i'll put them in unvalidated comparisons. Minor chances to the TableCodec and TableFeatures to allow for this (the codec can sometimes drop a column, and the feature now allows you to grab on to its header).
2011-07-11 16:16:15 -04:00
..
R Moving AnalyzeAnnotations into the archive because it has outlived its usefulness. 2011-07-02 10:39:53 -04:00
chainFiles Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
doc Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
java N and K (in binomial probability) got switched in RFA Walker with the last commit. No longer will NaNs be produced. 2011-07-11 16:16:15 -04:00
packages Moving AnalyzeAnnotations into the archive because it has outlived its usefulness. 2011-07-02 10:39:53 -04:00
perl Moving these supported perl scripts to public 2011-07-01 17:26:25 -04:00
scala Making the outputDir optional. Default = ./ 2011-07-05 16:30:41 -04:00
testdata Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00