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gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers
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rpoplin 9c3f403307 Add the calculated lod value to the info field of each recalibrated VCF record. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4153 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-08-27 21:33:58 +00:00
..
annotator Moving supported tools to core 2010-08-26 13:56:19 +00:00
beagle Moving supported tools to core 2010-08-26 13:56:19 +00:00
coverage Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
fasta Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
filters Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
genotyper Remove the check in the Unified Genotyper for hitting the max reads at locus value. Instead, simply add a flag to the INFO field if any of the samples has been downsampled. 95% hooked up. 2010-08-26 05:50:47 +00:00
indels Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
qc Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
recalibration Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
sequenom Office-mate courtesy: fixing Andrey's busted integration test 2010-08-26 02:00:06 +00:00
varianteval Command-line argument tagging is in, and the ROD system is hacked slightly to support the new syntax 2010-08-25 03:47:57 +00:00
variantrecalibration Add the calculated lod value to the info field of each recalibrated VCF record. 2010-08-27 21:33:58 +00:00
variantutils Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00
ClipReadsWalkersIntegrationTest.java Eliminated -mrl option. 2010-08-26 21:38:03 +00:00
PileupWalkerIntegrationTest.java Removed hard-coded pointers to references 2010-08-04 17:59:37 +00:00
PrintReadsWalkerUnitTest.java Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting. 2010-08-22 14:27:05 +00:00
VariantsToVCFIntegrationTest.java Update integration tests to use the new ROD syntax. 2010-08-25 18:13:30 +00:00