gatk-3.8/scala/src/org/broadinstitute/sting/queue
hanna 4c23b1fe9c Get rid of the static cache of ArgumentTypeDescriptors by making them an integral part of the
parsing engine.  Hugely lowers our memory footprint in integrationtests, but not yet enough to 
run Mark's new parallelized VariantEvalIntegrationTests.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4585 348d0f76-0448-11de-a6fe-93d51630548a
2010-10-27 19:44:55 +00:00
..
engine Queue UI Improvements: 2010-10-26 19:49:08 +00:00
extensions Changed fullCallingPipeline to output all contigs in the refence if scattering. 2010-10-24 03:01:06 +00:00
function Get rid of the static cache of ArgumentTypeDescriptors by making them an integral part of the 2010-10-27 19:44:55 +00:00
pipeline - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
util Get rid of the static cache of ArgumentTypeDescriptors by making them an integral part of the 2010-10-27 19:44:55 +00:00
QCommandLine.scala Get rid of the static cache of ArgumentTypeDescriptors by making them an integral part of the 2010-10-27 19:44:55 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Changed parsing engine to store the order the argument bindings based on their definition in the class, moving "-T" to the front of Queue command lines. 2010-10-20 21:43:52 +00:00
QScriptManager.scala - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
QSettings.scala Added status email support with -statusTo. Will send emails on failure of an individual function or success/failure of the whole pipeline. 2010-10-14 15:58:52 +00:00