gatk3的最后一个经典版本3.8

Ryan Poplin 85905dba92 Bugfix for GGA mode in UG silently ignoring indels ... -- Started by Mark. Finished up by Ryan. -- GGA mode still respected glm argument for SNP and INDEL models, so that you would silently fail to genotype indels at all if the -glm INDEL wasn't provided, but you'd still emit the sites, so you'd see records in the VCF but all alleles would be no calls. -- https://www.pivotaltracker.com/story/show/48924339 for more information -- [resolves #48924339]		2013-05-24 13:47:26 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Bugfix for GGA mode in UG silently ignoring indels	2013-05-24 13:47:26 -04:00
public	Archived banded logless PairHMM	2013-05-22 12:24:00 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Enable convenient display of diff engine output in Bamboo, plus misc. minor test-related improvements	2013-05-10 19:00:33 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00