147 lines
5.0 KiB
XML
147 lines
5.0 KiB
XML
<?xml version="1.0" encoding="UTF-8"?>
|
|
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
|
|
<modelVersion>4.0.0</modelVersion>
|
|
|
|
<parent>
|
|
<groupId>org.broadinstitute.sting</groupId>
|
|
<artifactId>sting-aggregator</artifactId>
|
|
<version>2.8-SNAPSHOT</version>
|
|
<relativePath>../..</relativePath>
|
|
</parent>
|
|
|
|
<artifactId>gatk-protected</artifactId>
|
|
<packaging>jar</packaging>
|
|
<name>GATK Protected</name>
|
|
|
|
<properties>
|
|
<sting.basedir>${project.basedir}/../..</sting.basedir>
|
|
<sting.packagetests.artifactId>gatk-package</sting.packagetests.artifactId>
|
|
</properties>
|
|
|
|
<dependencies>
|
|
<dependency>
|
|
<groupId>${project.groupId}</groupId>
|
|
<artifactId>gatk-framework</artifactId>
|
|
<version>${project.version}</version>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>net.sf.jgrapht</groupId>
|
|
<artifactId>jgrapht</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>gov.nist</groupId>
|
|
<artifactId>Jama</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>it.unimi.dsi</groupId>
|
|
<artifactId>fastutil</artifactId>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>${project.groupId}</groupId>
|
|
<artifactId>sting-utils</artifactId>
|
|
<version>${project.version}</version>
|
|
<classifier>test-utils</classifier>
|
|
<type>test-jar</type>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>${project.groupId}</groupId>
|
|
<artifactId>gatk-framework</artifactId>
|
|
<version>${project.version}</version>
|
|
<classifier>test-utils</classifier>
|
|
<type>test-jar</type>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
|
|
<dependency>
|
|
<groupId>org.testng</groupId>
|
|
<artifactId>testng</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
<dependency>
|
|
<groupId>com.google.caliper</groupId>
|
|
<artifactId>caliper</artifactId>
|
|
<scope>test</scope>
|
|
</dependency>
|
|
</dependencies>
|
|
|
|
<build>
|
|
<plugins>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-resources-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>copy-resource-bundle-log4j</id>
|
|
<phase>prepare-package</phase>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-javadoc-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>extract-resource-bundle</id>
|
|
<phase>prepare-package</phase>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
<plugin>
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
<artifactId>maven-invoker-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>package-unittests</id>
|
|
</execution>
|
|
<execution>
|
|
<id>package-integrationtests</id>
|
|
</execution>
|
|
<execution>
|
|
<id>package-largescaletests</id>
|
|
</execution>
|
|
<execution>
|
|
<id>package-pipelinetests</id>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
|
|
<profiles>
|
|
<profile>
|
|
<id>private</id>
|
|
<activation>
|
|
<file>
|
|
<exists>${basedir}/../../private/gatk-private/pom.xml</exists>
|
|
</file>
|
|
</activation>
|
|
<build>
|
|
<plugins>
|
|
<!-- TODO: All tests require access to private. For now. -->
|
|
<plugin>
|
|
<groupId>com.pyx4j</groupId>
|
|
<artifactId>maven-junction-plugin</artifactId>
|
|
<executions>
|
|
<execution>
|
|
<id>link-private-testdata</id>
|
|
<phase>process-test-resources</phase>
|
|
</execution>
|
|
<execution>
|
|
<id>unlink-private-testdata</id>
|
|
<phase>clean</phase>
|
|
</execution>
|
|
</executions>
|
|
</plugin>
|
|
</plugins>
|
|
</build>
|
|
</profile>
|
|
</profiles>
|
|
|
|
</project>
|