Mark DePristo 857b11b26f Done with GSA-506: Add nt and efficiency information to GATKRunReport ... -- GATKRunReports contain itemized information about the numThreads used to execute the GATK, as well as the efficiency of the use of those threads to get real work done, including time spent running, waiting, blocking, and waiting for IO -- See https://jira.broadinstitute.org/browse/GSA-506 for more details		2012-08-23 09:59:53 -04:00
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R	Fix for missing formatter in R 2.15	2012-08-17 11:49:02 -04:00
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java	Done with GSA-506: Add nt and efficiency information to GATKRunReport	2012-08-23 09:59:53 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	Split out contig names from Reference .fai file on white space (to support the GATK resource bundle's file human_g1k_v37.fasta.fai.gz, which does not use tab delimiters)	2012-06-07 16:56:32 -04:00
scala	Complete GSA-497: Let Queue write out runInfo on the fly, after each job group finishes running	2012-08-21 14:44:18 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00