Eric Banks c133909d32 Fixed edge condition in the realigner where a realigned read can sometimes get partially aligned off the end of the contig. ... Now we ignore such reads (which is much easier than trying to figure out when to soft-clip). Added unit test.		2014-01-08 00:37:28 -05:00
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java	Fixed edge condition in the realigner where a realigned read can sometimes get partially aligned off the end of the contig.	2014-01-08 00:37:28 -05:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00