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gatk-3.8/java/lib/edu/mit/broad/picard/util
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depristo 49a84c965e Added basic GenomeLoc class 
Support for operating on any location in genome (albeit slowly)
Improvements to dbSNP support

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@19 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-03-02 18:18:48 +00:00
..
AbstractTextFileParser.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
ArrayUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
BasicTextFileParser.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CloseableIteratorWrapper.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CloserUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CoordMath.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
Coverage.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
CreateAnalysisDirectory.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
FormatUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
Histogram.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
Interval.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
IntervalTree.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
ListMap.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
Log.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
MathUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
OverlapDetector.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
PasteParser.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
PeekableIterator.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
ProcessExecutor.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
RExecutor.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SamPairUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
SequenceUtil.java Added basic GenomeLoc class 2009-03-02 18:18:48 +00:00
StringSortingCollectionFactory.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
StringUtil.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00
TabbedTextFileParser.java Basic reorganization of tree 2009-02-28 15:28:56 +00:00