Ryan Poplin 8511c4385c Adding new pruning parameter to ReadThreadingAssembler ... -- numPruningSamples allows one to specify that the minPruning factor must be met by this many samples for a path to be considered good (e.g. seen twice in three samples). By default this is just one sample. -- adding unit test to test this new functionality		2013-06-17 16:46:40 -04:00
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java	Adding new pruning parameter to ReadThreadingAssembler	2013-06-17 16:46:40 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00