Ryan Poplin 850be5e9da Bug fix in SWPairwiseAlignment. ... -- When the alignments are sufficiently apart from each other all the scores in the sw matrix could be negative which screwed up the max score calculation since it started at zero.		2013-04-10 16:04:37 -04:00
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genotyper	HaplotypeCaller no longer uses reads with poor likelihoods w.r.t. any haplotype	2013-04-08 12:47:49 -04:00
haplotype	LD-based merging algorithm for nearby events in the haplotypes	2013-04-08 12:47:48 -04:00
nanoScheduler	Fix caching indices in the PairHMM	2013-04-08 11:05:12 -04:00
pairhmm	Fix caching indices in the PairHMM	2013-04-08 11:05:12 -04:00
recalibration	Cleanup and unit tests for QualityUtils	2013-02-16 07:31:37 -08:00
ContigComparatorUnitTest.java	Generalize and fixup ContigComparator	2013-02-09 09:52:13 -05:00
SWPairwiseAlignmentUnitTest.java	Bug fix in SWPairwiseAlignment.	2013-04-10 16:04:37 -04:00