aaron 074ec77dcc First go of the new output system for VE2. There are three different report types supported right now (Table, Grep, CSV), which can be ... specified with the reportType command line option in VE2. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3083 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-27 03:59:32 +00:00
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alignment	oops - didn't mean to check this in	2010-03-02 20:28:22 +00:00
gatk	Added an optional argument -rgbl --read_group_black_list to filter read groups.	2010-03-26 19:38:57 +00:00
oneoffprojects/walkers	First go of the new output system for VE2. There are three different report types supported right now (Table, Grep, CSV), which can be	2010-03-27 03:59:32 +00:00
playground	Moving VariantsToVCF to core.	2010-03-26 18:55:12 +00:00
utils	Unit tests for -XL arguments; expt. annotation calculating the GC content within 100 bp of the current SNP	2010-03-14 21:08:14 +00:00
BaseTest.java	added root GATKData variable	2010-02-12 15:25:34 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	another test-with-multiple outputs fix	2010-03-04 22:46:15 +00:00