Eric Banks 05bf6e3726 Updating md5s in pipeline tests so that they finally pass		2012-08-01 10:27:00 -04:00
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R	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
c	…
chainFiles	…
doc	…
java	Requested by Geraldine: adding a utility to register deprecated walkers (and the major version of the first release since they were removed) so that the User Error printed out for e.g. CountCovariates now states: Walker CountCovariates is no longer available in the GATK; it has been deprecated since version 2.0.	2012-08-01 09:50:00 -04:00
keys	…
packages	Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release.	2012-07-23 16:32:31 -04:00
perl	…
scala	Updating md5s in pipeline tests so that they finally pass	2012-08-01 10:27:00 -04:00
testdata	Reverting move of BQSR tests to public, as per DR's email	2012-07-19 10:02:05 -04:00