gatk3的最后一个经典版本3.8

Guillermo del Angel 84cd23f891 Merge branch 'master' of ssh://gsa4.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable		2012-08-01 10:55:37 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Add sanity check and possible bug fix for forum user: if haplotypes cannot be created from given alleles when genotyping indels (e.g. too close to contig boundary, etc.) in pool mode, empty allele list, signifying site can't be genotyped	2012-08-01 10:50:00 -04:00
public	Updating md5s in pipeline tests so that they finally pass	2012-08-01 10:27:00 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	Added the ability to update the Forum	2012-07-23 17:17:33 -04:00