hanna 84563b37e5 Partial flattening of the hanger data structure. Hanger data structure is ... not currently as flat as it could / should be, but it's already comparable to the speed of the reference implementation. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3512 348d0f76-0448-11de-a6fe-93d51630548a		2010-06-09 16:28:49 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Partial flattening of the hanger data structure. Hanger data structure is	2010-06-09 16:28:49 +00:00
test/org/broadinstitute/sting	updating Tribble with a couple of important Tabix fixes, and updating the variant eval integration tests to run each test with both plain vcf and gzipped tabix (added the tabix version	2010-06-09 01:47:04 +00:00