fromer 8439f0aa61 Check for VCFConstants.MISSING_VALUE_v4 when retrieving INFO fields and consider such values as non-existent ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4603 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-01 17:51:35 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Check for VCFConstants.MISSING_VALUE_v4 when retrieving INFO fields and consider such values as non-existent	2010-11-01 17:51:35 +00:00
test	N-Way-Out is back. Now uses SAMReadID to identify each read's source bam, so should be reliable. Interface is sort of ugly fo now: to generate output file names, .bam is stripped from input file names, then the value of -nWayOut argument is pasted on (and all the output files are written into the current dir).	2010-11-01 16:06:51 +00:00