Mark DePristo 84160bd83f Reorganization of Sample ... -- Moved Gender and Afflication to separate public enums -- PedReader 90% implemented -- Improve interface cleanup to XReadLines and UserException		2011-09-30 15:50:54 -04:00
..
R	Merge branch 'master' into sgintervals	2011-09-19 09:50:19 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Reorganization of Sample	2011-09-30 15:50:54 -04:00
packages	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merged bug fix from Stable into Unstable	2011-09-27 14:34:39 -04:00
testdata	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00