Mauricio Carneiro 839b918f58 Length metric updates to QualifyMissingIntervals ... * add a length of the overlaping interval metric as per CSER request * standardized the distance metrics to be positive when fully overlapping and the longest off-target tail (as a negative number) when not overlapping * add gatkdocs to the tool (finally!)		2013-10-04 10:18:13 -04:00
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java	Length metric updates to QualifyMissingIntervals	2013-10-04 10:18:13 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00