59 lines
2.2 KiB
Java
59 lines
2.2 KiB
Java
/*
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* Copyright (c) 2011, The Broad Institute
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*
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* Permission is hereby granted, free of charge, to any person
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* obtaining a copy of this software and associated documentation
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* files (the "Software"), to deal in the Software without
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* restriction, including without limitation the rights to use,
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* copy, modify, merge, publish, distribute, sublicense, and/or sell
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* copies of the Software, and to permit persons to whom the
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* Software is furnished to do so, subject to the following
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* conditions:
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*
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* The above copyright notice and this permission notice shall be
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* included in all copies or substantial portions of the Software.
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* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
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* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
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* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
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* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
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* OTHER DEALINGS IN THE SOFTWARE.
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*/
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package org.broadinstitute.sting.gatk;
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import org.broadinstitute.sting.WalkerTest;
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import org.broadinstitute.sting.utils.exceptions.UserException;
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import org.testng.annotations.Test;
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/**
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*
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*/
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public class EngineFeaturesIntegrationTest extends WalkerTest {
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private void testBadRODBindingInput(String type, String name) {
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WalkerTestSpec spec = new WalkerTestSpec("-T SelectVariants -L 1:1 --variants:" + type + " "
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+ b37dbSNP132 + " -R " + b37KGReference + " -o %s",
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1, UserException.class);
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executeTest(name, spec);
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}
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@Test() private void testBadRODBindingInputType1() {
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testBadRODBindingInput("beagle", "BEAGLE input to VCF expecting walker");
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}
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@Test() private void testBadRODBindingInputType2() {
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testBadRODBindingInput("vcf3", "VCF3 input to VCF expecting walker");
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}
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@Test() private void testBadRODBindingInputType3() {
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testBadRODBindingInput("bed", "Bed input to VCF expecting walker");
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}
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@Test() private void testBadRODBindingInputTypeUnknownType() {
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testBadRODBindingInput("bedXXX", "Unknown input to VCF expecting walker");
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}
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}
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