Scott Thibault 82dcdc01c0 Merge branch 'master' into st_fpga_hmm ... Conflicts: protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCaller.java protected/java/src/org/broadinstitute/sting/gatk/walkers/haplotypecaller/LikelihoodCalculationEngine.java		2013-06-28 10:13:05 -05:00
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src/org/broadinstitute/sting	Merge branch 'master' into st_fpga_hmm	2013-06-28 10:13:05 -05:00
test/org/broadinstitute/sting	Proper fix for previous RR -cancer_mode fix.	2013-06-26 14:48:09 -04:00