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gatk-3.8/java/src/org/broadinstitute/sting/commandline
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hanna 5f1b67c1de Coping out and forcing the entire GATK (and associated JVM) to use US English 
locale.  Method to force JVM into proper locale exists in CommandLineProgram
and is disabled by default, but implementers of CommandLineProgram can opt in
to the forced US locale by calling a static method.

Question for the VCF developers: I removed the code to explicitly output doubles
in US locale.  Do you / how do you want to handle this in applications that use
Tribble outside the GATK?


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3917 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-08-03 03:48:26 +00:00
..
Argument.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentCollection.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentDefinition.java Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor. 2010-06-30 18:37:58 +00:00
ArgumentDefinitionGroup.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentDefinitions.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentException.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentIOType.java Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. 2010-06-25 20:51:13 +00:00
ArgumentMatches.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentSource.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
ArgumentTypeDescriptor.java Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor. 2010-06-30 18:37:58 +00:00
ClassType.java Workaround for scala trait erasing parameterized types: 2010-07-07 03:15:10 +00:00
CommandLineProgram.java Coping out and forcing the entire GATK (and associated JVM) to use US English 2010-08-03 03:48:26 +00:00
CommandLineUtils.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
EnumerationArgumentDefault.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00
Input.java Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. 2010-06-25 20:51:13 +00:00
Output.java Started path of deprecation of Sting's @Argument by splitting the annotation into @Output and @Input. Anything that's not an @Output should be an @Input. 2010-06-25 20:51:13 +00:00
ParsingEngine.java Refactored ArgumentDefinition to absorb functionality from ArgumentDefinition and ArgumentTypeDescriptor. 2010-06-30 18:37:58 +00:00
ParsingMethod.java Fixing command line parsing to accept negative number arguments. Command line definitions must now start with a letter or underscore; previously, they could start with a digit. 2010-06-21 21:54:31 +00:00
package-info.java The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had 2010-04-20 15:26:32 +00:00