Mark DePristo 40e06f9afb Fixed broken RodBinding defaults. ... -- Verified now to be correct at runtime -- UnitTest covers this -- createTypeDefault now takes a Type, not a Class, so that parameterized classes can have their parameter fetched in the defaults.		2011-08-11 08:58:30 -04:00
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storage	Instead of having the padded reference base be some hackish attribute it is now an actual variable in the Variant Context class. More importantly, we now always require that it be present when padding is necessary - and validate as such upon construction of the VC. This cleans up the interface significantly because we no longer require that a reference base be passed in when writing a VC/VCF record.	2011-08-03 11:00:36 -04:00
stubs	Fixed broken RodBinding defaults.	2011-08-11 08:58:30 -04:00
DirectOutputTracker.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
OutputTracker.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
StingSAMFileWriter.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00
ThreadLocalOutputTracker.java	Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.	2011-07-17 20:29:58 -04:00