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arguments
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Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable
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2011-08-16 16:26:33 -04:00 |
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contexts
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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datasources
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Reverting optimization disable in unstable.
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2011-08-17 16:58:24 -04:00 |
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examples
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GATKDocsExample walker
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2011-08-11 11:01:21 -04:00 |
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executive
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Walker.isDone() aborts execution early
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2011-08-23 16:53:06 -04:00 |
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filters
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Renaming read filters with a superfluous 'Read' in their names. Kept the ones that made sense to have it (e.g. MalformedReadFilter).
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2011-08-18 22:01:33 -04:00 |
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io
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Fixed broken RodBinding defaults.
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2011-08-11 08:58:30 -04:00 |
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iterators
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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phonehome
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Moved ResolveHostname to general utils as a static function
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2011-08-28 12:04:16 -04:00 |
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refdata
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Conditional support for PerformanceTrackingQuerySource to measure Tribble / GATK bridge performance
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2011-09-01 10:41:55 -04:00 |
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report
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Fix for disallowed characters in GATKReportTable
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2011-08-26 13:24:06 -04:00 |
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traversals
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Walker.isDone() aborts execution early
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2011-08-23 16:53:06 -04:00 |
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walkers
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Adding hidden printing option. Also, always run UG in mode GENOTYPE_GIVEN_ALLELES given that we don't actually test for the correct alleles (otherwise UG may choose a different allele and we may falsely validate the wrong one).
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2011-09-01 11:40:35 -04:00 |
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CommandLineExecutable.java
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Removed -B support. Now explodes with error if -B provided.
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2011-08-16 16:13:47 -04:00 |
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CommandLineGATK.java
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Only concrete classes are now documented
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2011-08-18 14:04:47 -04:00 |
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DownsampleType.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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DownsamplingMethod.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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GenomeAnalysisEngine.java
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Now with accurate javadoc
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2011-08-22 17:25:15 -04:00 |
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ReadMetrics.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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ReadProperties.java
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Optimize imports run on the whole project, public and private. I just got too tired of all of the unused imports floating around. Confirmed that the system builds after the changes.
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2011-07-17 20:29:58 -04:00 |
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WalkerManager.java
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Removed support for RMD in @Requires and @Allows
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2011-08-03 15:36:55 -04:00 |
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package-info.java
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Reorganized the codebase beneath top-level public and private directories,
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2011-06-28 06:55:19 -04:00 |
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