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gatk3的最后一个经典版本3.8
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Guillermo del Angel 827be878b4 Bug fix when running UG in GenotypeGivenAlleles mode: if an input site to genotype had no coverage, the output VCF had AC,AF and AN inherited from input VCF, which could have nothing to do with given BAM so numbers could be non-sensical. Now new vc has clear attributes instead of attributes inherited from input VCF. 2012-02-06 11:58:13 -05:00
public Bug fix when running UG in GenotypeGivenAlleles mode: if an input site to genotype had no coverage, the output VCF had AC,AF and AN inherited from input VCF, which could have nothing to do with given BAM so numbers could be non-sensical. Now new vc has clear attributes instead of attributes inherited from input VCF. 2012-02-06 11:58:13 -05:00
settings SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline. 2012-01-03 15:18:36 -05:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
LICENSE One last test... 2011-06-28 19:18:17 -04:00
build.xml Rename alltests* targets in build.xml 2012-01-24 14:58:30 -05:00
ivy.xml SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline. 2012-01-03 15:18:36 -05:00