gatk3的最后一个经典版本3.8

Mauricio Carneiro 8272c8bd26 Added exceptions to CGL walker ... * Assert that a user provided a VCF not some other type of ROD * Assert that the VCF has samples * Assert that the samples in the BAM exist in the VCF * Warn the user if not all samples in the BAM are present in the VCF		2012-01-14 14:10:19 -05:00
public	Better location for the downsampling of reads in PrintReads	2012-01-14 14:06:09 -05:00
settings	Revving Picard to incorporate final version of ReadWalker performance improvements.	2012-01-10 12:12:33 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00