zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/java/test/org/broadinstitute/sting/utils/interval
History
kshakir f619dd3ca7 Refactored IntervalUtils used to parse and scatter intervals for Queue. 
Scattering non-contig interval lists by number of loci in the intervals instead of just number of intervals.
Queue caches the list of locs and how to split them up instead of reloading them from disk repeatedly.
TODO: general purpose function to divide data evenly.
Skip over comments when parsing picard analysis files.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5687 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-04-26 00:06:00 +00:00
..
IntervalFileMergingIteratorUnitTest.java Convert GenomeLocParser into an instance variable. This change is required 2010-11-10 17:59:50 +00:00
IntervalIntegrationTest.java Enable BAM OTF index writing by default. 2011-04-07 23:44:25 +00:00
IntervalUtilsUnitTest.java Refactored IntervalUtils used to parse and scatter intervals for Queue. 2011-04-26 00:06:00 +00:00
NwayIntervalMergingIteratorUnitTest.java Convert GenomeLocParser into an instance variable. This change is required 2010-11-10 17:59:50 +00:00