gatk-3.8/R/phasing/plot.testSpecificFragments.R

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R

L = 76
k = 75
params = paste("L= ", L, ", k= ", k, sep="")
FRAGMENT_SIZES = 0:100 + 2 * L
pCoverHetPairWithRead = pPairedEndReadsOfSpecificFragmentCanCoverHetPairAtDistance(L, FRAGMENT_SIZES, k)
scatter(FRAGMENT_SIZES, pCoverHetPairWithRead, "testSpecificFragments", xlab="Fragment size", ylab="Probability of covering het pair", main=params)