kshakir 8211cee0b2 Queue UI Improvements: ... - Forcing user to set the temp directory via -Djava.io.tmpdir to avoid filling up /tmp. - By default deleting job outputs tagged as intermediate. - Defaulting pipeline to scatter count 1 (no reads deleted). - Cleaning up temp classes even when scripting fails. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4573 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-26 19:49:08 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Queue UI Improvements:	2010-10-26 19:49:08 +00:00
test	Trivially phases any hom site (since it is always correct to continue the previous haplotypes by appending the same allele onto both haplotypes)	2010-10-25 16:58:41 +00:00