60 lines
3.0 KiB
XML
60 lines
3.0 KiB
XML
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<ivy-module version="1.0">
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<info organisation="org.broadinstitute" module="Sting"/>
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<configurations>
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<conf name="default" description="the core dependencies for the GATK"/>
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<conf name="scala" extends="default" description="the dependencies for scala"/>
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<conf name="queue" extends="scala" description="the dependencies for Queue"/>
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<conf name="findbugs" extends="default" description="the dependencies for Findbugs"/>
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</configurations>
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<dependencies defaultconf="default">
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<dependency org="net.sf" name="sam" rev="latest.integration"/>
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<dependency org="net.sf" name="picard" rev="latest.integration"/>
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<dependency org="edu.mit.broad" name="picard-private-parts" rev="latest.integration"/>
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<dependency org="junit" name="junit" rev="4.4"/>
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<dependency org="log4j" name="log4j" rev="1.2.15">
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<!-- Don't include javax.mail here in default, only used in scala->default by commons-email -->
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<exclude org="javax.mail" />
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</dependency>
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<dependency org="colt" name="colt" rev="1.2.0"/>
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<dependency org="jboss" name="javassist" rev="3.7.ga"/>
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<dependency org="org.simpleframework" name="simple-xml" rev="2.0.4"/>
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<dependency org="org.apache.bcel" name="bcel" rev="5.2"/>
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<dependency org="org.yaml" name="snakeyaml" rev="1.7"/>
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<!-- Dependencies for reflections mvn repository -->
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<dependency org="org.reflections" name="reflections" rev="0.9.5-RC2"/>
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<!-- Matrix package from math.nist.gov -->
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<dependency org="gov.nist" name="Jama" rev="1.0.2"/>
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<!-- Dependencies for the graph aligner -->
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<dependency org="org.jgrapht" name="jgrapht-jdk1.5" rev="0.7.3"/>
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<!-- Commons Dependencies -->
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<dependency org="org.apache.commons" name="commons-jexl" rev="2.0"/>
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<dependency org="commons-logging" name="commons-logging" rev="1.1.1"/>
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<dependency org="commons-io" name="commons-io" rev="2.0"/>
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<!-- Dependencies for Queue GATK Extensions code generator living in java/src -->
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<dependency org="commons-lang" name="commons-lang" rev="2.5"/>
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<!-- Scala dependancies -->
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<dependency org="org.scala-lang" name="scala-compiler" rev="2.8.0" conf="scala->default"/>
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<dependency org="org.scala-lang" name="scala-library" rev="2.8.0" conf="scala->default"/>
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<dependency org="org.apache.commons" name="commons-email" rev="1.2"/>
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<!-- findbug dependencies -->
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<dependency org="net.sourceforge.findbugs" name="findbugs" rev="1.3.2" conf="findbugs->default"/>
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<dependency org="net.sourceforge.findbugs" name="findbugs-ant" rev="1.3.2" conf="findbugs->default"/>
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<!-- dependencies we need to annotate findbug issues -->
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<dependency org="net.sourceforge.findbugs" name="annotations" rev="1.3.2" conf="default"/>
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<dependency org="net.sourceforge.findbugs" name="jsr305" rev="1.3.2" conf="default"/>
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<!-- Exclude dependencies on sun libraries where the downloads aren't available but included in the jvm. -->
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<exclude org="javax.servlet" />
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<exclude org="javax.jms" />
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<exclude org="com.sun.*" />
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</dependencies>
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</ivy-module>
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