ebanks ab84ed8c68 Fix for Mark: get rid of old program tags whose IDs clash with the recalibrator/realigner tag (including if the id has a .1 at the end, etc.). Keeping them around is dangerous because we don't know which one refers to the latest run of the tool on the bam. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3798 348d0f76-0448-11de-a6fe-93d51630548a		2010-07-15 19:13:50 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Fix for Mark: get rid of old program tags whose IDs clash with the recalibrator/realigner tag (including if the id has a .1 at the end, etc.). Keeping them around is dangerous because we don't know which one refers to the latest run of the tool on the bam.	2010-07-15 19:13:50 +00:00
test	oops, forgot to update this integration test	2010-07-14 11:38:33 +00:00