Ryan Poplin 35baf0b155 This along with Mauricio's previous commit (thanks!) fixes GSA-522. There are no longer any modifications to reads in the map calls of ActiveRegion walkers. Added the bam which identified this error as a new integration test.		2012-08-30 09:07:36 -04:00
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bqsr	Re-enabling parallelism in the BaseRecalibrator now that the release is out.	2012-08-20 21:25:14 -04:00
compression/reducereads	Fixed divide by zero bug when downsampler goes over regions where reads are all filtered out. Added Guillermo's bug report as an integration test	2012-08-09 13:02:11 -04:00
genotyper	Update MD5s with new FS score	2012-08-28 08:06:47 -04:00
haplotypecaller	This along with Mauricio's previous commit (thanks!) fixes GSA-522. There are no longer any modifications to reads in the map calls of ActiveRegion walkers. Added the bam which identified this error as a new integration test.	2012-08-30 09:07:36 -04:00