Geraldine Van der Auwera 81d4eaea29 Fixed warnings in LAATV and ValidateVariants		2016-05-27 12:46:02 -04:00
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VectorPairHMM	Update licenses	2016-03-05 01:09:43 -08:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
gatk-engine	Moved post-IR MQ reverter filter to public	2016-05-27 12:39:58 -04:00
gatk-queue	Update licenses	2016-03-05 01:09:43 -08:00
gatk-queue-extensions-generator	Adding OtherArgumentRequired option to allow an argument to require an additional argument.	2016-05-17 16:31:41 -04:00
gatk-queue-extensions-public	Yf tumor only (#1298)	2016-05-12 15:26:04 -04:00
gatk-root	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
gatk-tools-public	Fixed warnings in LAATV and ValidateVariants	2016-05-27 12:46:02 -04:00
gatk-utils	Fix for the sum(AD) > DP bug.	2016-05-26 15:04:52 -04:00
gsalib	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
repo	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00