David Roazen 91d10431d3 BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary ... This is a quick-and-dirty patch for the null pointer error Mauricio reported earlier. Later on we might want to address in a more general way the fact that we validate user intervals against the reference but not against the merged BAM header produced by the engine at runtime.		2012-03-09 15:20:16 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary	2012-03-09 15:20:16 -05:00
test	Avoid buffer underflow in GATKBAMIndex by detecting premature EOF in BAM indices	2012-03-08 15:30:44 -05:00